Publications

Jie Luo, Muge Molbay, Ying Chen, Izabela Horvath, Karoline Kadletz, Benjamin Kick, Shan Zhao, Rami Al-Maskari, Inderjeet Singh, Mayar Ali, Harsharan Singh Bhatia, David-Paul Minde, Moritz Negwer, Luciano Hoeher, Gian Marco Calandra, Bernhard Groschup, Jinpeng Su, Ceren Kimna, Zhouyi Rong, Nikolas Galensowske, Mihail Ivilinov Todorov, Denise Jeridi, Tzu-Lun Ohn, Stefan Roth, Alba Simats, Vikramjeet Singh, Igor Khalin, Chenchen Pan, Bernardo A. Arús, Oliver T. Bruns, Reinhard Zeidler, Arthur Liesz, Ulrike Protzer, Nikolaus Plesnila, Siegfried Ussar, Farida Hellal, Johannes Paetzold, Markus Elsner, Hendrik Dietz, Ali Erturk (2025). Nanocarrier imaging at single-cell resolution across entire mouse bodies with deep learning. Nature Biotechnology.

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Zhouyi Rong, Hongcheng Mai, Gregor Ebert, Saketh Kapoor, Victor G. Puelles, Jan Czogalla, Senbin Hu, Jinpeng Su, Danilo Prtvar, Inderjeet Singh, Julia Schädler, Claire Delbridge, Hanno Steinke, Hannah Frenzel, Katja Schmidt, Christian Braun, Gina Bruch, Viktoria Ruf, Mayar Ali, Kurt-Wolfram Sühs, Mojtaba Nemati, Franziska Hopfner, Selin Ulukaya, Denise Jeridi, Daniele Mistretta, Özüm Sehnaz Caliskan, Jochen Martin Wettengel, Fatma Cherif, Zeynep Ilgin Kolabas, Müge Molbay, Izabela Horvath, Shan Zhao, Natalie Krahmer, Ali Önder Yildirim, Siegfried Ussar, Jochen Herms, Tobias B. Huber, Sabina Tahirovic, Susanne M. Schwarzmaier, Nikolaus Plesnila, Günter Höglinger, Benjamin Ondruschka, Ingo Bechmann, Ulrike Protzer, Markus Elsner, Harsharan Singh Bhatia, Farida Hellal, Ali Ertürk (2024). Persistence of spike protein at the skull-meninges-brain axis may contribute to the neurological sequelae of COVID-19. Cell Host & Microbe.

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Doris Kaltenecker, Rami Al-Maskari, Moritz Negwer, Luciano Hoeher, Florian Kofler, Shan Zhao, Mihail Todorov, Zhouyi Rong, Johannes Christian Paetzold, Benedikt Wiestler, Marie Piraud, Daniel Rueckert, Julia Geppert, Pauline Morigny, Maria Rohm, Bjoern H. Menze, Stephan Herzig, Mauricio Berriel Diaz, Ali Ertürk (2024). Virtual reality-empowered deep-learning analysis of brain cells. Nature Methods.

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Natalie De Souza, Shan Zhao, Bernd Bodenmiller (2024). Multiplex protein imaging in tumour biology. Nature Reviews Cancer.

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Nikita Vladimirov, Fabian F. Voigt, Thomas Naert, Gabriela R. Araujo, Ruiyao Cai, Anna Maria Reuss, Shan Zhao, Patricia Schmid, Sven Hildebrand, Martina Schaettin, Dominik Groos, José María Mateos, Philipp Bethge, Taiyo Yamamoto, Valentino Aerne, Alard Roebroeck, Ali Ertürk, Adriano Aguzzi, Urs Ziegler, Esther Stoeckli, Laura Baudis, Soeren S. Lienkamp, Fritjof Helmchen (2024). Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples. Nature Communications.

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Zeynep Ilgin Kolabas, Louis B. Kuemmerle, Robert Perneczky, Benjamin Förstera, Selin Ulukaya, Mayar Ali, Saketh Kapoor, Laura M. Bartos, Maren Büttner, Ozum Sehnaz Caliskan, Zhouyi Rong, Hongcheng Mai, Luciano Höher, Denise Jeridi, Muge Molbay, Igor Khalin, Ioannis K. Deligiannis, Moritz Negwer, Kenny Roberts, Alba Simats, Olga Carofiglio, Mihail I. Todorov, Izabela Horvath, Furkan Ozturk, Selina Hummel, Gloria Biechele, Artem Zatcepin, Marcus Unterrainer, Johannes Gnörich, Jay Roodselaar, Joshua Shrouder, Pardis Khosravani, Benjamin Tast, Lisa Richter, Laura Díaz-Marugán, Doris Kaltenecker, Laurin Lux, Ying Chen, Shan Zhao, Boris-Stephan Rauchmann, Michael Sterr, Ines Kunze, Karen Stanic, Vanessa W.Y. Kan, Simon Besson-Girard, Sabrina Katzdobler, Carla Palleis, Julia Schädler, Johannes C. Paetzold, Sabine Liebscher, Anja E. Hauser, Ozgun Gokce, Heiko Lickert, Hanno Steinke, Corinne Benakis, Christian Braun, Celia P. Martinez-Jimenez, Katharina Buerger, Nathalie L. Albert, Günter Höglinger, Johannes Levin, Christian Haass, Anna Kopczak, Martin Dichgans, Joachim Havla, Tania Kümpfel, Martin Kerschensteiner, Martina Schifferer, Mikael Simons, Arthur Liesz, Natalie Krahmer, Omer A. Bayraktar, Nicolai Franzmeier, Nikolaus Plesnila, Suheda Erener, Victor G. Puelles, Claire Delbridge, Harsharan Singh Bhatia, Farida Hellal, Markus Elsner, Ingo Bechmann, Benjamin Ondruschka, Matthias Brendel, Fabian J. Theis, Ali Erturk (2023). Distinct molecular profiles of skull bone marrow in health and neurological disorders. Cell.

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Ruiyao Cai, Zeynep Ilgin Kolabas, Chenchen Pan, Hongcheng Mai, Shan Zhao, Doris Kaltenecker, Fabian F. Voigt, Muge Molbay, Tzu-Lun Ohn, Cécile Vincke, Mihail I. Todorov, Fritjof Helmchen, Jo A. Van Ginderachter, Ali Ertürk (2023). Whole-mouse clearing and imaging at the cellular level with vDISCO. Nature Protocols.

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Hongcheng Mai, Zhouyi Rong, Shan Zhao, Ruiyao Cai, Hanno Steinke, Ingo Bechmann, Ali Ertürk (2022). Scalable tissue labeling and clearing of intact human organs. Nature Protocols.

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Shan Zhao, Mihail Ivilinov Todorov, Ruiyao Cai, Rami Ai -Maskari, Hanno Steinke, Elisabeth Kemter, Hongcheng Mai, Zhouyi Rong, Martin Warmer, Karen Stanic, Oliver Schoppe, Johannes Christian Paetzold, Benno Gesierich, Milagros N. Wong, Tobias B. Huber, Marco Duering, Oliver Thomas Bruns, Bjoern Menze, Jan Lipfert, Victor G. Puelles, Eckhard Wolf, Ingo Bechmann, Ali Ertürk (2020). Cellular and Molecular Probing of Intact Human Organs. Cell.

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Ruiyao Cai, Chenchen Pan, Alireza Ghasemigharagoz, Mihail Ivilinov Todorov, Benjamin Förstera, Shan Zhao, Harsharan S. Bhatia, Arnaldo Parra-Damas, Leander Mrowka, Delphine Theodorou, Markus Rempfler, Anna L. R. Xavier, Benjamin T. Kress, Corinne Benakis, Hanno Steinke, Sabine Liebscher, Ingo Bechmann, Arthur Liesz, Bjoern Menze, Martin Kerschensteiner, Maiken Nedergaard, Ali Ertürk (2019). Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull–meninges connections. Nature Neuroscience.

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Yandong Lu, Shan Zhao, Shijie Zhou, Si-Cong Chen, Tuoping Luo (2019). Enantioselective syntheses and application of 4- textitepi -galiellalactone and the corresponding activity-based probe: from strained bicycles to strained tricycles. Organic & Biomolecular Chemistry.

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Xuerong Yu, Fan Su, Chang Liu, Haosen Yuan, Shan Zhao, Zhiyao Zhou, Tianfei Quan, Tuoping Luo (2018). Enantioselective Total Syntheses of Various Amphilectane and Serrulatane Diterpenoids via Cope Rearrangements. Journal of the American Chemical Society.

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Jianye Dai, Kai Liang, Shan Zhao, Wentong Jia, Yuan Liu, Hongkun Wu, Jia Lv, Chen Cao, Tao Chen, Shentian Zhuang, Xiaomeng Hou, Shijie Zhou, Xiannian Zhang, Xiao-Wei Chen, Yanyi Huang, Rui-Ping Xiao, Yan-Ling Wang, Tuoping Luo, Junyu Xiao, Chu Wang (2018). Chemoproteomics reveals baicalin activates hepatic CPT1 to ameliorate diet-induced obesity and hepatic steatosis. Proceedings of the National Academy of Sciences.

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Shan Zhao, Jianye Dai, Mo Hu, Chang Liu, Rong Meng, Xiaoyun Liu, Chu Wang, Tuoping Luo (2016). Photo-induced coupling reactions of tetrazoles with carboxylic acids in aqueous solution: application in protein labelling. Chemical Communications.

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Hui Zhao, Xiaokang Li, Shan Zhao, Yang Zeng, Long Zhao, Haiyan Ding, Wei Sun, Yanan Du (2014). Microengineered textitin vitro model of cardiac fibrosis through modulating myofibroblast mechanotransduction. Biofabrication.

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Shan Zhao, Zhiyuan Shen, Jingyu Wang, Xiaokang Li, Yang Zeng, Bingjie Wang, Yonghong He, Yanan Du (2014). Glycerol-Mediated Nanostructure Modification Leading to Improved Transparency of Porous Polymeric Scaffolds for High Performance 3D Cell Imaging. Biomacromolecules.

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Xiaokang Li, Xinyong Zhang, Shan Zhao, Jingyu Wang, Gang Liu, Yanan Du (2014). Micro-scaffold array chip for upgrading cell-based high-throughput drug testing to 3D using benchtop equipment. Lab Chip.

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Hui Chen, Yang Zeng, Wei Liu, Shan Zhao, Jinhui Wu, Yanan Du (2013). Multifaceted applications of nanomaterials in cell engineering and therapy. Biotechnology Advances.

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Shan Zhao, Hui Zhao, Xinyong Zhang, Yaqian Li, Yanan Du (2013). Off-the-shelf microsponge arrays for facile and efficient construction of miniaturized 3D cellular microenvironments for versatile cell-based assays. Lab on a Chip.

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