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Nanocarrier imaging at single-cell resolution across entire mouse bodies with deep learning
Abstract Efficient and accurate nanocarrier development for targeted drug delivery is hindered by a lack of methods to analyze its …
Jie Luo
,
Muge Molbay
,
Ying Chen
,
Izabela Horvath
,
Karoline Kadletz
,
Benjamin Kick
,
Shan Zhao
,
Rami Al-Maskari
,
Inderjeet Singh
,
Mayar Ali
,
Harsharan Singh Bhatia
,
David-Paul Minde
,
Moritz Negwer
,
Luciano Hoeher
,
Gian Marco Calandra
,
Bernhard Groschup
,
Jinpeng Su
,
Ceren Kimna
,
Zhouyi Rong
,
Nikolas Galensowske
,
Mihail Ivilinov Todorov
,
Denise Jeridi
,
Tzu-Lun Ohn
,
Stefan Roth
,
Alba Simats
,
Vikramjeet Singh
,
Igor Khalin
,
Chenchen Pan
,
Bernardo A. Arús
,
Oliver T. Bruns
,
Reinhard Zeidler
,
Arthur Liesz
,
Ulrike Protzer
,
Nikolaus Plesnila
,
Siegfried Ussar
,
Farida Hellal
,
Johannes Paetzold
,
Markus Elsner
,
Hendrik Dietz
,
Ali Erturk
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DOI
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Persistence of spike protein at the skull-meninges-brain axis may contribute to the neurological sequelae of COVID-19
SARS-CoV-2 infection is associated with long-lasting neurological symptoms, although the underlying mechanisms remain unclear. Using …
Zhouyi Rong
,
Hongcheng Mai
,
Gregor Ebert
,
Saketh Kapoor
,
Victor G. Puelles
,
Jan Czogalla
,
Senbin Hu
,
Jinpeng Su
,
Danilo Prtvar
,
Inderjeet Singh
,
Julia Schädler
,
Claire Delbridge
,
Hanno Steinke
,
Hannah Frenzel
,
Katja Schmidt
,
Christian Braun
,
Gina Bruch
,
Viktoria Ruf
,
Mayar Ali
,
Kurt-Wolfram Sühs
,
Mojtaba Nemati
,
Franziska Hopfner
,
Selin Ulukaya
,
Denise Jeridi
,
Daniele Mistretta
,
Özüm Sehnaz Caliskan
,
Jochen Martin Wettengel
,
Fatma Cherif
,
Zeynep Ilgin Kolabas
,
Müge Molbay
,
Izabela Horvath
,
Shan Zhao
,
Natalie Krahmer
,
Ali Önder Yildirim
,
Siegfried Ussar
,
Jochen Herms
,
Tobias B. Huber
,
Sabina Tahirovic
,
Susanne M. Schwarzmaier
,
Nikolaus Plesnila
,
Günter Höglinger
,
Benjamin Ondruschka
,
Ingo Bechmann
,
Ulrike Protzer
,
Markus Elsner
,
Harsharan Singh Bhatia
,
Farida Hellal
,
Ali Ertürk
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Virtual reality-empowered deep-learning analysis of brain cells
Abstract Automated detection of specific cells in three-dimensional datasets such as whole-brain light-sheet image stacks is …
Doris Kaltenecker
,
Rami Al-Maskari
,
Moritz Negwer
,
Luciano Hoeher
,
Florian Kofler
,
Shan Zhao
,
Mihail Todorov
,
Zhouyi Rong
,
Johannes Christian Paetzold
,
Benedikt Wiestler
,
Marie Piraud
,
Daniel Rueckert
,
Julia Geppert
,
Pauline Morigny
,
Maria Rohm
,
Bjoern H. Menze
,
Stephan Herzig
,
Mauricio Berriel Diaz
,
Ali Ertürk
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DOI
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Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples
Abstract In 2015, we launched the mesoSPIM initiative, an open-source project for making light-sheet microscopy of large cleared …
Nikita Vladimirov
,
Fabian F. Voigt
,
Thomas Naert
,
Gabriela R. Araujo
,
Ruiyao Cai
,
Anna Maria Reuss
,
Shan Zhao
,
Patricia Schmid
,
Sven Hildebrand
,
Martina Schaettin
,
Dominik Groos
,
José María Mateos
,
Philipp Bethge
,
Taiyo Yamamoto
,
Valentino Aerne
,
Alard Roebroeck
,
Ali Ertürk
,
Adriano Aguzzi
,
Urs Ziegler
,
Esther Stoeckli
,
Laura Baudis
,
Soeren S. Lienkamp
,
Fritjof Helmchen
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DOI
URL
Multiplex protein imaging in tumour biology
Multiplex protein imaging advances tumor biology by revealing cellular interactions and spatial organization. This review discusses its applications, integration with spatial omics, and challenges.
Natalie De Souza
,
Shan Zhao
,
Bernd Bodenmiller
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Distinct molecular profiles of skull bone marrow in health and neurological disorders
The bone marrow in the skull is important for shaping immune responses in the brain and meninges, but its molecular makeup among bones …
Zeynep Ilgin Kolabas
,
Louis B. Kuemmerle
,
Robert Perneczky
,
Benjamin Förstera
,
Selin Ulukaya
,
Mayar Ali
,
Saketh Kapoor
,
Laura M. Bartos
,
Maren Büttner
,
Ozum Sehnaz Caliskan
,
Zhouyi Rong
,
Hongcheng Mai
,
Luciano Höher
,
Denise Jeridi
,
Muge Molbay
,
Igor Khalin
,
Ioannis K. Deligiannis
,
Moritz Negwer
,
Kenny Roberts
,
Alba Simats
,
Olga Carofiglio
,
Mihail I. Todorov
,
Izabela Horvath
,
Furkan Ozturk
,
Selina Hummel
,
Gloria Biechele
,
Artem Zatcepin
,
Marcus Unterrainer
,
Johannes Gnörich
,
Jay Roodselaar
,
Joshua Shrouder
,
Pardis Khosravani
,
Benjamin Tast
,
Lisa Richter
,
Laura Díaz-Marugán
,
Doris Kaltenecker
,
Laurin Lux
,
Ying Chen
,
Shan Zhao
,
Boris-Stephan Rauchmann
,
Michael Sterr
,
Ines Kunze
,
Karen Stanic
,
Vanessa W.Y. Kan
,
Simon Besson-Girard
,
Sabrina Katzdobler
,
Carla Palleis
,
Julia Schädler
,
Johannes C. Paetzold
,
Sabine Liebscher
,
Anja E. Hauser
,
Ozgun Gokce
,
Heiko Lickert
,
Hanno Steinke
,
Corinne Benakis
,
Christian Braun
,
Celia P. Martinez-Jimenez
,
Katharina Buerger
,
Nathalie L. Albert
,
Günter Höglinger
,
Johannes Levin
,
Christian Haass
,
Anna Kopczak
,
Martin Dichgans
,
Joachim Havla
,
Tania Kümpfel
,
Martin Kerschensteiner
,
Martina Schifferer
,
Mikael Simons
,
Arthur Liesz
,
Natalie Krahmer
,
Omer A. Bayraktar
,
Nicolai Franzmeier
,
Nikolaus Plesnila
,
Suheda Erener
,
Victor G. Puelles
,
Claire Delbridge
,
Harsharan Singh Bhatia
,
Farida Hellal
,
Markus Elsner
,
Ingo Bechmann
,
Benjamin Ondruschka
,
Matthias Brendel
,
Fabian J. Theis
,
Ali Erturk
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URL
Whole-mouse clearing and imaging at the cellular level with vDISCO
Ruiyao Cai
,
Zeynep Ilgin Kolabas
,
Chenchen Pan
,
Hongcheng Mai
,
Shan Zhao
,
Doris Kaltenecker
,
Fabian F. Voigt
,
Muge Molbay
,
Tzu-Lun Ohn
,
Cécile Vincke
,
Mihail I. Todorov
,
Fritjof Helmchen
,
Jo A. Van Ginderachter
,
Ali Ertürk
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DOI
URL
Scalable tissue labeling and clearing of intact human organs
Hongcheng Mai
,
Zhouyi Rong
,
Shan Zhao
,
Ruiyao Cai
,
Hanno Steinke
,
Ingo Bechmann
,
Ali Ertürk
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DOI
URL
Cellular and Molecular Probing of Intact Human Organs
SHANEL permeabilizes aged human organs for deep 3D imaging, enabling transparency, comprehensive labeling, and rapid cell-level analysis.
Shan Zhao
,
Mihail Ivilinov Todorov
,
Ruiyao Cai
,
Rami Ai -Maskari
,
Hanno Steinke
,
Elisabeth Kemter
,
Hongcheng Mai
,
Zhouyi Rong
,
Martin Warmer
,
Karen Stanic
,
Oliver Schoppe
,
Johannes Christian Paetzold
,
Benno Gesierich
,
Milagros N. Wong
,
Tobias B. Huber
,
Marco Duering
,
Oliver Thomas Bruns
,
Bjoern Menze
,
Jan Lipfert
,
Victor G. Puelles
,
Eckhard Wolf
,
Ingo Bechmann
,
Ali Ertürk
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DOI
Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull–meninges connections
Ruiyao Cai
,
Chenchen Pan
,
Alireza Ghasemigharagoz
,
Mihail Ivilinov Todorov
,
Benjamin Förstera
,
Shan Zhao
,
Harsharan S. Bhatia
,
Arnaldo Parra-Damas
,
Leander Mrowka
,
Delphine Theodorou
,
Markus Rempfler
,
Anna L. R. Xavier
,
Benjamin T. Kress
,
Corinne Benakis
,
Hanno Steinke
,
Sabine Liebscher
,
Ingo Bechmann
,
Arthur Liesz
,
Bjoern Menze
,
Martin Kerschensteiner
,
Maiken Nedergaard
,
Ali Ertürk
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